Analysis of Traveling and Standing Waves in the DNA Model by Peyrard-Bishop-Dauxois
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Дата
2016
DOI
Науковий ступінь
Рівень дисертації
Шифр та назва спеціальності
Рада захисту
Установа захисту
Науковий керівник
Члени комітету
Видавець
NTU "KhPI"
Анотація
The model by Peyrard - Bishop - Dauxois (the PBD model), which describes the DNA molecule nonlinear
dynamics, is considered. This model represents two chains of rigid disks connected by nonlinear springs. An
interaction between opposite disks of different chains is modeled by the Morse potential. Solutions of equations
of motion are obtained analytically in two approximations of the small parameter method for two limit cases.
The first one is the long-wavelength limit of traveling waves, when frequencies of vibrations are small.
Dispersion relations are obtained also for the long-wavelength limit by the small parameter method. The
second case is a limit of high frequency standing waves in the form of out-of-phase vibration modes. Two such
out-of-phase modes are obtained; it is selected one of them, which has the larger frequency. In both cases
systems of nonlinear ODEs are obtained. Nonlinear terms are presented by the Tailor series expansion, where
terms up to third degree by displacement are saved. The analytical solutions are compared with checking
numerical simulation obtained by the Runge - Kutta method of the 4-th order. The comparison shows a good
exactness of these approximate analytical solutions. Stability of the standing localized modes is analyzed by the
numerical-analytical approach, which is connected with the Lyapunov definition of stability.
Опис
Ключові слова
PBD model, long-wavelength approximation, out-of-phase vibration modes
Бібліографічний опис
Mikhlin Yu. V. Analysis of Traveling and Standing Waves in the DNA Model by Peyrard-Bishop-Dauxois / Yu. V. Mikhlin, N. S. Goloskubova // Nonlinear Dynamics–2016 (ND-KhPI2016) : proceedings of 5th International Conference, dedicated to the 90th anniversary of Academician V. L. Rvachev, September 27-30, 2016 = Нелінійна динаміка–2016 : тези доп. 5-ї Міжнар. конф., 27-30 вересня 2016 р. – Kharkov : NTU "KhPI", 2016. – P. 165-172.